(io): remove usage of deprecated getInput getOutput getInOut

Description

Closes #505 (closed), #755 (closed)

Extra work

The deprecated DynamicType class was removed, which really helps to clear the build log from many warnings.

How to test it?

Build and run some apps...

Work plan

getInput/getInOut/getOutput:

• module_navigation_calibration @mschweitzer
• module_navigation_openvslam @mschweitzer
• module_viz_scene2d @aancel1
• module_viz_qt3d @aancel1
• module_filter_image @mschweitzer
• module_filter_point @mschweitzer
• module_filter_vision @mschweitzer
• module_filter_mesh @mschweitzer
• module_ui_qt @mkugler1
• module_ui_base @mkugler1
• module_ui_dicom @mkugler1
• module_ui_viz @mkugler1
• module_memory @fbridault
• module_sync @fbridault
• module_data @fbridault
• module_geometry_vision @fbridault
• module_io_matrix @dweckmann
• module_io_igtl @fbridault
• module_io_itk @fbridault
• module_io_vtk @dweckmann
• module_io_dicomweb @fbridault
• module_io_pcl @dweckmann
• module_io_vision @fbridault
• module_io_dicom @fbridault
• module_io_realsense @dweckmann
• module_io_atoms @dweckmann
• module_io_video @dweckmann
• module_io_dimse @fbridault
• service @fbridault
• dataTest @fbridault
• Tuto05MultithreadConsoleCpp @fbridault

getLockedInput/getLockedInOut:

• viz_scene3d @fbridault
• service @fbridault
• module_viz_scene2d @aancel1
• module_viz_scene3d @aancel1
• module_filter_image @mschweitzer
• module_filter_mesh @mschweitzer
• module_filter_vision @mschweitzer
• module_ui_base @mkugler1
• module_ui_qt @mkugler1
• module_data @fbridault
• module_geometry_base @mschweitzer
• module_geometry_vision @mschweitzer
• module_io_matrix @dweckmann
• module_io_vtk @dweckmann
• module_io_video @dweckmann
• module_io_dimse @fbridault

getWeakInput/getWeakInOut:

• service @fbridault
• module_ui_qt @mkugler1
• module_viz_scene3d @aancel1
• module_data @fbridault

Updated BUT Untested services:

• module_filter_image
  • SAutomaticRegistration
  • SResampler
  • SPropagator
  • SPlaneSlicer
  • SMIPMatchingRegistration
  • SMatrixRegressor
  • SlabelImageToBinaryImage
  • SlabelGeometryImage
  • SImageCenter
  • SBitwiseAnd
  • SAutomaticRegistration
• module_filter_vision
  • SUltrasoundImage
  • STranformDepthTL2mm
  • STrasnformDepthMap2mm
  • SPointCloudFromDepthMap
• module_filter_mesh
  • SNeedle
  • SUltrasoundMesh
• module_geometry_base
  • STransformLandmark